Set my current site as using the Zend Framework in the framework section of properties.

No matter what controller I go into the views folder in the framework window is empty, no files shown.

Only thing I can think of is that my site is using modules, is this supported?

I recommend you to contact support and provide a sample project illustrating the issue

OK, I'll test a non modular project when I get some time over the next few days and if the modular project still doesn't work I'll email support.